Program

Tuesday, May 27, 2014

Time Event  
08:00 - 08:45 Participants welcoming - Participants welcoming  
08:45 - 09:00 Workshop opening - Dominique Joly, Guy Perrière  
09:00 - 09:30 Spotlight on the Thaumarcheota - Céline Brochier-Armanet  
09:30 - 09:50 Depicting the microbial diversity from high-throughput sequencing amplicons: a phylogenetic approach - Najwa Taib  
09:50 - 10:10 RADseq, phylogenies and estimation of genetic diversity - Marie Cariou  
10:10 - 10:30 Empirical assessment of RAD sequencing for interspecific phylogeny - Astrid Cruaud  
10:30 - 11:00 Coffee break  
11:00 - 11:20 Robust estimation of phylogenetic diversity: steer clear of rare species - Thibault Latrille  
11:20 - 11:40 Co-phylogeny reconstruction via an Approximate Bayesian Computation - Christian Baudet  
11:40 - 12:00 Examining the bacterial diversity of oligotrophic soil environments using metagenomic approaches - Michael DuBow  
12:00 - 12:20 Bioenergetic use of arsenic in haloarchaea revealed by metagenomic analysis - Nicolas Rascovan  
12:20 - 12:40 SortMeRNA 2: ribosomal RNA classification for taxonomic assignation - Hélène Touzet  
12:40 - 14:00 Lunch and posters  
14:00 - 14:30 The use of metabarcoding in monitoring of biological diversity: some notes on complementarity and validation - Nigel Gilles Yoccoz  
14:30 - 14:50 GnS-PIPE: an optimized bionformatic pipeline to efficiently assess microbial taxonomic diversity of complex environments using high throughput sequencing technologies - Sébastien Terrat  
14:50 - 15:10 High-throughput molecular ecology of carabid beetles: trophic interactions and pest control - Stefaniya Kamenova  
15:10 - 15:30 Protist community structure in coastal arctic environments: does ocean acidification affect marine microbes? - Lucie Bittner  
15:30 - 15:50 Evidence for a core bacterial microbiota among geographically and genetically different populations of the tiger mosquito Aedes albopictus - Guillaume Minard  
15:50 - 16:10 Toward solving the mystery of 'chameleon' cyanobacteria - Laurence Garczarek  
16:10 - 16:40 Coffee break  
16:40 - 17:00 Non invasive identification of past oral microbial flora - Olivier Gorgé  
17:00 - 17:20 The Arctic snowpack microbial community highlighted by metagenomics and metatranscriptomics - Lorrie Maccario  
17:20 - 17:40 Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments - François Thomas  
17:40 - 19:30 Poster session - Poster session  
19:30 - 21:30 Buffet dinner  

Wednesday, May 28, 2014

Time Event  
09:00 - 09:30 High-throughput molecular barcoding as a tool for assessment and monitoring the environmental impact associated with aquaculture - Jan Pawlowski  
09:30 - 09:50 Speciation, hybridization, and introgression among three closely-related butterfly species in the Alps - Thibaut Capblancq  
09:50 - 10:10 Comparative Pop(pool)ation genomics of two chronotypes of the metazoan parasite Schistosoma mansoni: insights into adaptation to a new host - Eve Toulza  
10:10 - 10:30 Genome analyses of symbiont-bearing trypanosomatids indicate that the bacterium is essential for amino acid and vitamin production - Cecilia Coimbra Klein  
10:30 - 11:00 Coffee break  
11:00 - 11:20 RecStat: a set of R utilities for Coding DNA Sequences prediction in metagenomes - Guy Perrière  
11:20 - 11:40 UrQt: unsupervised quality trimming for NGS data - Laurent Modolo  
11:40 - 12:00 MacSyFinder: mining genomes for molecular systems - Sophie Abby  
12:00 - 12:20 De novo transcriptome assembly for a non model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease - Axelle Marchant  
12:20 - 12:40 A framework for identifying sex-linked genes using RNAseq data - Aline Muyle  
12:40 - 14:00 Lunch and posters  
14:00 - 14:30 Wolbachia through time: palaeosymbiology - Mark Blaxter  
14:30 - 14:50 Metabolic response of a planktonic ecosystem to environmental perturbation - Amos Kirilovsky  
14:50 - 15:10 What are the most abundant genes in marine plankton? - Magali Lescot  
15:10 - 15:30 Use of single cell amplified genome and metatranscriptomics to survey Pelagomonas calceolata metabolism - Bonora Mario Neou  
15:30 - 15:40 Closing ceremony - End of the workshop  
  
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