Program

Tuesday, May 27, 2014

Time Event  
8:00 am - 8:45 am Participants welcoming - Participants welcoming  
8:45 am - 9:00 am Workshop opening - Dominique Joly, Guy Perrière  
9:00 am - 9:30 am Spotlight on the Thaumarcheota - Céline Brochier-Armanet  
9:30 am - 9:50 am Depicting the microbial diversity from high-throughput sequencing amplicons: a phylogenetic approach - Najwa Taib  
9:50 am - 10:10 am RADseq, phylogenies and estimation of genetic diversity - Marie Cariou  
10:10 am - 10:30 am Empirical assessment of RAD sequencing for interspecific phylogeny - Astrid Cruaud  
10:30 am - 11:00 am Coffee break  
11:00 am - 11:20 am Robust estimation of phylogenetic diversity: steer clear of rare species - Thibault Latrille  
11:20 am - 11:40 am Co-phylogeny reconstruction via an Approximate Bayesian Computation - Christian Baudet  
11:40 am - 12:00 pm Examining the bacterial diversity of oligotrophic soil environments using metagenomic approaches - Michael DuBow  
12:00 pm - 12:20 pm Bioenergetic use of arsenic in haloarchaea revealed by metagenomic analysis - Nicolas Rascovan  
12:20 pm - 12:40 pm SortMeRNA 2: ribosomal RNA classification for taxonomic assignation - Hélène Touzet  
12:40 pm - 2:00 pm Lunch and posters  
2:00 pm - 2:30 pm The use of metabarcoding in monitoring of biological diversity: some notes on complementarity and validation - Nigel Gilles Yoccoz  
2:30 pm - 2:50 pm GnS-PIPE: an optimized bionformatic pipeline to efficiently assess microbial taxonomic diversity of complex environments using high throughput sequencing technologies - Sébastien Terrat  
2:50 pm - 3:10 pm High-throughput molecular ecology of carabid beetles: trophic interactions and pest control - Stefaniya Kamenova  
3:10 pm - 3:30 pm Protist community structure in coastal arctic environments: does ocean acidification affect marine microbes? - Lucie Bittner  
3:30 pm - 3:50 pm Evidence for a core bacterial microbiota among geographically and genetically different populations of the tiger mosquito Aedes albopictus - Guillaume Minard  
3:50 pm - 4:10 pm Toward solving the mystery of 'chameleon' cyanobacteria - Laurence Garczarek  
4:10 pm - 4:40 pm Coffee break  
4:40 pm - 5:00 pm Non invasive identification of past oral microbial flora - Olivier Gorgé  
5:00 pm - 5:20 pm The Arctic snowpack microbial community highlighted by metagenomics and metatranscriptomics - Lorrie Maccario  
5:20 pm - 5:40 pm Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments - François Thomas  
5:40 pm - 7:30 pm Poster session - Poster session  
7:30 pm - 9:30 pm Buffet dinner  

Wednesday, May 28, 2014

Time Event  
9:00 am - 9:30 am High-throughput molecular barcoding as a tool for assessment and monitoring the environmental impact associated with aquaculture - Jan Pawlowski  
9:30 am - 9:50 am Speciation, hybridization, and introgression among three closely-related butterfly species in the Alps - Thibaut Capblancq  
9:50 am - 10:10 am Comparative Pop(pool)ation genomics of two chronotypes of the metazoan parasite Schistosoma mansoni: insights into adaptation to a new host - Eve Toulza  
10:10 am - 10:30 am Genome analyses of symbiont-bearing trypanosomatids indicate that the bacterium is essential for amino acid and vitamin production - Cecilia Coimbra Klein  
10:30 am - 11:00 am Coffee break  
11:00 am - 11:20 am RecStat: a set of R utilities for Coding DNA Sequences prediction in metagenomes - Guy Perrière  
11:20 am - 11:40 am UrQt: unsupervised quality trimming for NGS data - Laurent Modolo  
11:40 am - 12:00 pm MacSyFinder: mining genomes for molecular systems - Sophie Abby  
12:00 pm - 12:20 pm De novo transcriptome assembly for a non model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease - Axelle Marchant  
12:20 pm - 12:40 pm A framework for identifying sex-linked genes using RNAseq data - Aline Muyle  
12:40 pm - 2:00 pm Lunch and posters  
2:00 pm - 2:30 pm Wolbachia through time: palaeosymbiology - Mark Blaxter  
2:30 pm - 2:50 pm Metabolic response of a planktonic ecosystem to environmental perturbation - Amos Kirilovsky  
2:50 pm - 3:10 pm What are the most abundant genes in marine plankton? - Magali Lescot  
3:10 pm - 3:30 pm Use of single cell amplified genome and metatranscriptomics to survey Pelagomonas calceolata metabolism - Bonora Mario Neou  
3:30 pm - 3:40 pm Closing ceremony - End of the workshop  
  
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